Xingchi Yan

Currenty Under construction. I am USC QCB with Prof. Geoffrey Fudenberg and with Prof. Maxim B. Prigozhin at Harvard MCB Previouly, I was trained in applied physics and applied mathematics from Brown University before transitioning my focus to quantitative biology and theoretical biophysics.

News
Research Highlights
  • Biophysics: Chemical reaction networks involved in cell signaling and 3D chromosome organization
  • Applied Physics: Fluid dynamics; Single-molecule biophysics
  • Disorder Systems: Wave-number selection in pattern-forming systems
Publications ( show selected / show by date / show by topic )

Topics: Applied Physics / Biophysics (* indicates equal contribution and † indicates corresponding author)

Identifying Intermolecular Interactions in Single-Molecule Localization Microscopy
Xingchi Yan, Polly Y. Yu, Arvind Srinivasan, Sohaib Abdul Rehman, Surabhi Kottigegollahalli Sreenivasa, Jeremy B. Conwaya, Maxim B. Prigozhin†

PNAS/ doi/ Main/ SI/ Code/ MCB News

Ab-trapping - a peripheral staining artifact in antibody-based microscopy and genomics
Konrad Chudzik*, Yuko Sato*, Xingchi Yan*, Simon Ullrich, Watanya Trakarnphornsombat, Lothar Schermelleh, Geoffrey Fudenberg†, Hiroshi Kimura†, Michael I. Robson†, Irina Solovei†

bioRxiv / Main/ SI/ Code

All-optical Photoacoustic Imaging: Models and Numerics
Xingchi Yan*†, Siyuan Song*, Hanxun Jin

Submitted

Determination of Fresnel integrals for X-ray phase contrast imaging with the fast Fourier transform
Xingchi Yan, Gerald J. Diebold†

Microscopy & Microanalysis / Paper

Photoacoustic effect from an oscillating source in a one-dimensional resonator
Xingchi Yan†, Siyuan Song, Gerald J. Diebold

Europhysics Letters / Paper / EPL Highlights of 2024

Ponderomotive force on an optically levitated sphere in an amplitude-modulated laser beam
Wenyu Bai, Xingchi Yan, Gerald J. Diebold†

Nonlinear Dynamics / Paper

Generation of high amplitude compressions and rarefactions in a photoacoustically excited droplet
Xingchi Yan, Gerald J. Diebold†

Photoacoustics / Paper

Abel inversion of optical beam deflection signals from photoacoustic waves with symmetry in one, two, and three dimensions
Xingchi Yan†, Gerald J. Diebold

Journal of Applied Physics / Paper

Teaching
Misc
I am fascinated by collective behavior and emergence in both quantum and classical many-body systems — see the example of topological Haldane models studied with ultracold fermions.